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Daily numbers, graphs, analysis thread 17

979 replies

BigChocFrenzy · 06/09/2020 22:04

Welcome to thread 17 of the daily updates

Resource links:

Uk dashboard deaths, cases, hospitals, tests - 4 nations, English regions & LAs
MSAO Map of English cases
Cases Tracker England Local Government
ONS MSAO Map English deaths
CovidMessenger live update by council district in England
Scot gov Daily data
Scotland TravellingTabby LAs, care homes, hospitals, tests, t&t
PH Wales LAs, tests, ONS deaths
NI Dashboard
UK govt pressers Slides & data
NHS t&t England & UK testing Weekly stats
R estimates UK & English regions
PHE Surveillance report infections & watchlists each Thursday
ONS England infection surveillance report each Friday
Datasets for ONS surveillance reports
ONS Roundup deaths, infections & economic reports
ECDC rolling 14-day incidence EEA & UK
Worldometer UK page
Our World in Data test positivity etc, DIY graphs
FT DIY graphs compare deaths, cases, raw / million pop
Covidly.com world summary & graphs

We welcome factual, data driven, and civil discussions from all contributors 📈 📉 📊 👍

OP posts:
Thread gallery
60
NeurotrashWarrior · 07/09/2020 15:13

From a bbc report:

"A third of all cases in England last week were people aged between 20 and 29. "

BighouseLittlemouse · 07/09/2020 15:14

So again anecdota but I’ve been trying all day to book a test for my DS. I just get service unavailable screen.

It’s really not great.

whatsnext2 · 07/09/2020 15:19

@TheSunIsStillShining it was one state, not the whole country, and they took representative samples.

@MRex I think they are basing that conclusion because although the pandemic peaked there in May, and quarantining, such as it was, stopped shortly after, deaths have continued to fall, giving what is now a very low IFR of 0.17%

AmelieTaylor · 07/09/2020 15:24

Did you see my post above yours? Worth a try?!

Good luck.

It's bloody madness and it's in the 7th of Sept. it's going to be a bloody long & difficult autumn/winter!!

sirfredfredgeorge · 07/09/2020 15:30

*"A total of 3289 individuals (80·6%) agreed to participate in the study"

If I remember my uni stat classes ... In a country of 200+ m I'd stay this is statistically insignificant cohort and is not representative.*

The survey said nothing about Brazil, so your 200 million is irrelevant, criticising the sampling methodology might be reasonable, but you do need to actually read the paper and criticise how they sampled, not make up numbers.

sirfredfredgeorge · 07/09/2020 15:33

2) I don't understand how they are defining herd immunity, they still have cases and deaths!

Herd immunity is defined simply by there being sufficient immunity in the herd that the virus cannot spread exponentially, it can still be brought in from outside the herd, and there can still be deaths.

MRex · 07/09/2020 15:38

Ok thanks @whatsnext2 and @sirfredfredgeorge, it's a shame they didn't include in the report charts for that area for cases and deaths, as well as movement between states / immigration into that state. I would think most readers won't know enough about that part of Brazil to see if it's reasonable for them to call it herd immunity or not.

Firefliess · 07/09/2020 15:42

@Bighouse -I've also heard from someone who's son works at our local testing centre that if you just turn up they will test you. So might be worth a try if you've got one not too far away

Derbygerbil · 07/09/2020 15:45

@whatsnext2

Thank you for the link. It would have been very useful if they had reported on, firstly, the age structure of the group, as IFR is extremely sensitive to age and, secondly, compared the relative ages of those with antibodies to the population age composition to identify whether there were a disproportionate number of younger (or older) people who had been infected.

As for statistical significance, the study was focused on one state, so can’t be extrapolated to the whole country, irrespective of Brazil’s population size.

sirfredfredgeorge · 07/09/2020 15:49

it's reasonable for them to call it herd immunity or not.

They don't say it's herd immunity though, they specifically say there's not? The title is:

Population-based seroprevalence of SARS-CoV-2 is more than halfway through the herd immunity threshold in the State of Maranhão, Brazil

More than half way through, which at 40% I think they are justified in saying, covid is not that contagious, so 80% is likely a reasonable lower bound for the levels required, most of the predictions are lower than that (smallpox was completely eradicated at 80% immunity). The role of super spreaders on the basic reproduction number makes it more complicated to know for sure.

SistemaAddict · 07/09/2020 15:52

@AmelieTaylor thank you but I don't drive. I'll just keep trying.

Ds is getting warmer and is only in shorts and a T-shirt type PJs. He's eaten lunch though so that's good.

When do England's numbers for today get published?

Morfin · 07/09/2020 15:52

[quote NeurotrashWarrior]The Sunderland spike has hit a few primary schools so far.

www.chroniclelive.co.uk/news/north-east-news/string-sunderland-schools-business-forced-18889408[/quote]
The charity football match is more worrying as surely that was held outdoors?

BighouseLittlemouse · 07/09/2020 15:53

Thanks Firefliess and Amelie Taylor will try that.

Have to admit I think people just won’t bother. I’m very rule abiding and even I’m feeling v annoyed. Two other parents have said to just send my other DC in anyway. It’s really made me realise how unsustainable this will be with kids and school over winter.

MRex · 07/09/2020 15:54

@sirfredfredgeorge - in the content of the report however:
"Interpretation: To the best of our knowledge, the seroprevalence of SARS-CoV-2 estimated in this population-based survey was the highest and the closest to the herd
immunity threshold reported to date. Our results suggest that the herd immunity threshold is not as low as 20%, but at least higher than or equal to around 40%."
"Herd immunity to severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) is an ongoing debate. Although many consider it to be around 60%-70%, using the classical
formula 1-1/R0, where R0 is the basic reproductive number, some reports have proposed that herd immunity could be as low as 10%-20% or around 43%, due to the heterogeneity in susceptibility or exposure to infection across population groups. However, reported population-based seroprevalences of SARS-CoV-2 were lower than
the herd immunity thresholds, ranging from extremely low infections rates, close to 1%-3%, to values as high as 14·3% in Barcelona, Spain, and 22·7% in New York City. In Brazil, the highest reported population-based seroprevalence was 17·9%, for the São Paulo municipality."

MRex · 07/09/2020 15:56

@Bercows - they usually start publishing at 4pm and do occasional dots / bits of info up until about 4.10/4.20pm.

SistemaAddict · 07/09/2020 15:58

Thanks @MRex

TheSunIsStillShining · 07/09/2020 15:58

@sirfredfredgeorge

*"A total of 3289 individuals (80·6%) agreed to participate in the study"

If I remember my uni stat classes ... In a country of 200+ m I'd stay this is statistically insignificant cohort and is not representative.*

The survey said nothing about Brazil, so your 200 million is irrelevant, criticising the sampling methodology might be reasonable, but you do need to actually read the paper and criticise how they sampled, not make up numbers.

You are right, my bad.
jimmyhill · 07/09/2020 15:59

Another almost 3000 new cases today, yesterday was not a blip

sirfredfredgeorge · 07/09/2020 16:00

compared the relative ages of those with antibodies to the population age composition to identify whether there were a disproportionate number of younger (or older) people who had been infected.

They did, look at table 1. Generally they failed to get working age men from their study, they did however over-recruit in the older age groups at the expense of the under 9's. So difficult to say what impact that might have had.

Their conclusion was there was no relationship found between age, but the discriminatory power of the sampling would have made this difficult - ie only found differences if they were absolutely huge.

Frazzled2207 · 07/09/2020 16:00

The transport update is that 7 Greek islands are now subject to quarantine. They are abandoning the whole country approach.

BigChocFrenzy · 07/09/2020 16:00

Herd immunity normally requires a vaccine, unless the IFR is low and immunity is nearly lifelong

COVID IFR is about 10 x higher than flu
and the igG antibodies conferring immunity drop away within weeks.

Also, recent serological surveys in high COVID epicentres have shown v high levels of antibodies, suggesting herd immunity in desnely populated areas may need to be very high indeed:

  • 93% in Iquitos, Peru
  • 78% in some areas of New York City
  • 57 % in Mumbai slums

It is thought T cells in at least some previously infected people may combat the disease,
but scientists researching these for COVID have warned they do not confer actual immunity or stop virus shed, but probably would considerably reduce severity of illness:

"Immunity" and T cells
here is a scientist specialising in vaccines & the immune system:

https://threadreaderapp.com/thread/1293344524731691008.html

Shane Crotty@profshanecrotty

1/ There are various tweets misinterpreting COVID-19 “pre-existing immunity” and making dangerous claims about herd immunity.

Since many of those claims refer to our scientific papers,
we will reiterate the facts.

2/ Our 1st scientific paper showed that ~50% of unexposed people have T cells that recognized SARS-CoV-2 already doi.org/10.1016/j.cell….

The most obvious conclusion was these were memory T cells from previous common cold coronavirus infections,
but that was not directly shown.

3/ Our 2nd paper, very recently published,
showed that these were memory T cells from previous common cold coronavirus infections
https://science.sciencemag.org/content/early/2020/08/04/science.abd3871

Five other labs have also published related findings
doi.org/10.1038/s41577…

4/ These observations about pre-existing T cell immunity (also call "crossreactive immune memory",
which avoids the word "immunity" that sometimes gets misinterpreted as “protective immunity”
[sorry, immunology is complicated] )
are important because...

5/ ...these memory cells MAY impact people’s responses to SARS-CoV-2 infection,
or COVID-19 vaccines.

6/ Therefore, we have pointed out that these coronavirus crossreactive immune memory T cells are important,
to pay attention to in human COVID-19 studies this year.

7/ We SPECULATE that it is conceivable that these T cells may potentially reduce COVID-19 disease severity,
based on things we know about flu and T cells.

8/ These are only speculations (no data)
and because of their potential importance it is key for scientists to test these ideas, as quickly as possible.

While scientists are racing as fast as possible,
sophisticated research like this usually takes a lot of time and resources.

9/ We, and other labs, are working hard on these unanswered questions.

10/ Additionally, even if our most optimistic speculations about crossreactive T cell memory were found to be correct,
it would mean that just as many people would get infected with SARS-CoV-2, but fewer would become severely ill and die from COVID-19.

11/ T cells generally don’t completely prevent infections, they limit disease
(make it shorter and/or less serious).

Thus, wearing a mask is much more effective than hoping you and the people around you have pre-existing T cell memory.
Wearing a mask stops infections.

OP posts:
Frazzled2207 · 07/09/2020 16:01

Regarding testing availability this is going to be a BIG issue for schools. I understand that it’s a lab capacity issue rather than an actual tests issue. That said the number of tests taking place is about 100,000 below the government’s stated daily capacity so something is clearly not quite right. Or the daily capacity number is made up.

SistemaAddict · 07/09/2020 16:02

🤔

TheSunIsStillShining · 07/09/2020 16:04

@BigChocFrenzy
Thank you for your ongoing fact finding/posting!

BigChocFrenzy · 07/09/2020 16:06

SD including masks are a vital part of the strategy to cut off exponential growth of infections
Also testing, track & trace and isolation of infected people

Paul Hunter, Prof. Medicine, UEA:

www.sciencemediacentre.org/expert-reaction-2988-new-uk-cases-of-covid-19-announced-on-6th-september/

“Sadly it is beginning to look like we are moving into a period of exponential growth in the UK epidemic
and if so we can expect further increases over coming weeks.”

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