It’s not the number of genes that matter, it’s what they do. A single gene is the difference between having, or not having, cystic fibrosis, sickle cell disease, Fragile X syndrome, muscular dystrophy, or Huntington disease.
A Y chromosome isn’t an X with a bit missing. It has the sex determining gene. The SRY has profound effect on male development. It takes the Male down a completely different developmental pathway. We talk about that every day on this forum. It’s why women’s sport is going to go down the toilet if biological men are allowed to compete. It’s not some inconsequential gene like the one determining eye colour.
The number of genes are irrelevant. What the hell kind of argument is that women are more like plants than men are because they have more genes?
Are women with Turner’s Syndrome less than other women because they have only one X chromosome? Are men with Klinefelter’s more than women because they have XXY karyotype? Or how about XXXY? They must be really bloody special; they must have the combined superpowers of a man and a woman, mustn’t they?
The reason the Y has so few genres is that it has evolved to deliver one specific gene that makes a world of difference. If it had a shit-load of other vital genes only one half of the population would inherit them. Thats why the genes that are exclusive to the Y chromosome, such as the SRY gene, are largely concerned with sexual dimorphism.
All men have an X chromosome. They have all the genes that women have, but they also have a Y chromosome that suppresses some of those genes and expresses other genes that women don’t have.