but when in comes to late abortion I see a dogma as absurd to me as saying transwomen are women
You're deliberately missing the point of what many women have pointed out to you. This case is not, and was never, about the rights and wrongs of abortion. This case is about the best interests of a vulnerable adult who lacks capacity.
Whatever one's views on late term abortions, they are legal in the UK. This means that a late term abortion was an option on the table for the court of protection in this very distressing case.
Of all the unpalatable options before the court, the court decided that a late term abortion was the option in the best interests of a vulnerable adult who lacks capacity.
Sometimes, best interests is a synonym for least harm where protection matters are concerned.
Do I think the court of protection is infallible? No. Do I think it has made an error on the best interests of this vulnerable adult in this case? I don't and can't know for sure unless the full judgement is made available. Do I think it more likely than not that the court has come to the best available judgement given all the circumstances? Yes.