Because he's counting "deaths during Letby's shifts".
Why?
Ask him -- that's what he says he's counting in his emails with Elston.
If you want to instead define "death during Letby's shifts" as "death of baby who was at CoCH during any Letby shift", then you have to define "death during non-Letby's shifts" as "death of baby who was at CoCH during any non-Letby shift" for a proper comparison between the two sets of shifts. Several babies will likely end up in both sets. Evans doesn't give the numbers under this definition.
You can't just pick and choose which deaths
I'm not. I'm saying: take all deaths and all shifts, fix a definition for assigning a death to a shift, and apply it consistently. It can be "death happened on the shift", or "death happened to a baby who was cared for on the shift", or something else. It just has to be a definition that can be applied unambiguously to any death and any shift, to get a yes/no answer, without needing to know if it's Letby's shift or not.
You can then count deaths assigned to Letby shifts, and divide by the number of Letby's shifts, to get the death rate per shift for Letby shifts; and do the same for non-Letby shifts. If the rates differ, you can compute the chance of getting such a difference by chance on the assumption that rates of natural deaths are the same in the two sets. But the assumption is only valid if, on every factor that can affect the rate of natural deaths, the two sets of shifts (Letby and non-Letby) are similar. They have similar fractions of night shifts. They have similar fractions of shifts with 25-weekers. And so on -- not all factors may be known, but at least the known ones must be controlled for.
So, no, you don't need to deal with individual deaths' "context" (hard to do objectively), but you do need to show that no relevant aggregate metrics differ between the Letby/non-Letby sets of shifts.