Right, now that we have stopped splitting our sides at songs which mock and deny the existence of some very sick children, perhaps we could have a stab at having an adult conversation about the science. 
I have been looking at the review which silverfrog linked to earlier. It is a very concise overview of the hypotheses to date and makes for very interesting reading. A lot of what is there will be known to some of us on this thread but it is very helpful to have it gathered together in one place in a concise document.
What is also very interesting about this is that it is authored by a mainstream scientist and published in a mainstream journal. Obviously one is able to discuss vaccines and autism in the US without ending up before a tribunal! (Perhaps that is because the US government was not so foolish as to grant indemnity to the manufacturers?)
Here are a few things that were of interest to me;
"However, there have been case reports of late-onset autism (DeLong et al., 1981; Gillberg, 1986; Gillberg, 1991) in individuals who were 11, 14, and 31 years of age and who previously had herpes encephalitis. Therefore, autism is not necessarily a developmental disorder."
I hadn't come across this info before. I'm interested in the clearly viral nature of the phenomenon.
"In 1988, two doses of MMR II were recommended to immunize those individuals who did not respond to the first injection. A spike of incidence of autism accompanied the addition of the second dose of MMR II. Also, in 1988, MMR II was used in the United Kingdom, which reported a dramatic increase in prevalence of autism to 1/64 (noted above). Canada, Denmark, and Japan also reported dramatic increases in prevalence of autism. It is important to note that unlike the former MMR, the rubella component of MMR II was propagated in a human cell line derived from embryonic lung tissue (Merck and Co.,
Inc., 2010). The MMR II vaccine is contaminated with human DNA from the cell line. This human DNA could be the cause of the spikes in incidence. An additional increased spike in incidence of autism occurred in 1995 when the chicken pox vaccine was grown in human fetal tissue (Merck and Co., Inc.,
2001; Breuer, 2003)"
Yikes - I haven't read about this before either.
"The human DNA from the vaccine can be randomly inserted into the recipient?s genes by homologous recombination, a process that occurs spontaneously only within a species. Hot spots for DNA insertion are found on the X chromosome in eight autism-associated genes involved in nerve cell synapse formation, central nervous system development, and mitochondrial function (Deisher, 2010). This could provide some explanation of why autism is predominantly a disease of boys."
Most intriguing.
"For example, one hypothesis of the cause of autism is that the pertussis toxin in the DPT vaccine causes a separation of the G-alpha protein from retinoid receptors in genetically at-risk children (Farfel et al., 1999; Megson, 2000). The pertussis toxin creates a chronic autoimmune monocytic infiltration of the gut mucosa lamina propia and may disconnect the G-alpha protein pathways, leaving some G-alphamodulated pathways unopposed. In turn, the non-specific branch of the immune system is turned on and, without retinoid switching, cannot be down regulated."
This is of special interest to me as my DD reacted to her DTPs (although she does not have autism).
"Infections/infectious agents that appear to be causally related to the development of autistic behavior include encephalitis caused by measles, congenital rubella, herpes simplex virus, mumps, varicella, cytomegalovirus, and Stealth virus(Chess,
1971; DeLong et al., 1981; Libbey et al., 2005). Rubella virus was the first known cause of autism (Chess, 1971; Ziring, 2001). In addition, measles and mumps viruses can cause encephalitis that can result in autism later in time (Chess, 1977; Ziring,
1997). The viral infections that cause encephalitis that result in autism often occur in utero. However, encephalitis caused by herpes viruses has been documented to cause autism in older individuals (mentioned above). Taken together, these
data show that some viruses can cause autism."
As I said before I have an interest in viruses - I'm also always gobsmacked by the notion that people will accept that the wild viruses can cause autism, but there seems to be a stubborn refusal that vaccination with these viruses could have the same outcome
.
"Acetaminophen has also been suggested to cause autism (Schultz et al., 2008; Schultz, 2010). Children given acetaminophen after the MMR II vaccine were significantly more likely to become autistic than children given ibuprofen."
Again of personal interest to me considering how my DD reacts to paracetamol. Also I have heard this info before and think it is mindblowing that doctors still recommend paracetamol after a jab. (Although that may be changing as they have also found out the paracetamol use can affect vaccine efficacy. Somebody posted a link about that on another thread - will try to find it.)
Thanks silverfrog for posting the link.