I don't think that's likely. In a one-off disaster the number of men could get very small, but this is a period of more than 100,000 years; over that timescale the sex ratio is certain to be close to 50/50, because evolutionary pressure won't allow it to diverge by much.
The use of "breeding individuals" just means that given the data they have, they couldn't rule out a typical population of (say) 2,000; only 1,300 of whom reproduced. There could well be a sex imbalance here, e.g. more females than males reproducing.