We set aside two days for Kyoto but only ended up spending one there.
Overall, Kyoto wasn’t really for me. I loved Kiyomizudera. It’s one of the most breathtaking places I’ve ever been, but I far preferred Nara and Kamakura to Kyoto for general atmosphere. Fushimi Inari was insanely crowded when we were there. Our pictures look great but it was not an enjoyable experience in person. Gion was just not for me and the behaviour of the Geisha paparazzi made me really uncomfortable. A lot of the maiko are just teenage girls and people treat them like animals in a zoo. We were there in cherry blossom season though, so it may be a very different experience at a less busy time of year.
We’re going back to Japan next year and are going to skip Kyoto entirely. We’re going to go to Uji for a day and also plan to see Wakayama prefecture, Hiroshima, Miyajima, Iwakuni, Kawagoe, Kurashiki, Onomichi and Himeji Castle. Our trip this year taught us that our favourite days were the ones we spent outside of Tokyo, Osaka and Kyoto. We still plan to stay in cities (Tokyo, Osaka and Hiroshima) but plan to use them as bases for exploring the surrounding regions.
However, everyone is different. I think a lot of people find the idea of skipping Kyoto unthinkable, particularly if Japan is going to be a once-in-a-lifetime trip.