Have to disagree with camper, sorry, but gentian violet is no longer recommended as it's mildly carcenogenic. It's pretty tough to get hold of, too, and if you're going to the docs on Tuesday you can get just what you need then which is prob quicker than you could get anything like GV online.
Your pharmacy should be able to sell you Daktarin GEL for your baby, and CREAM for you. This is Miconazole if you get a generic version. The gel needs to be carefully wiped around the mouth in little smears - not big bits to avoid chocking. The gel is sticky and stays in the mouth to do its job but doesn't sink through skin so isn't suitable for you, whereas the cream is skin permeable.
I would avoid vinegar as it will dry the nipples and may cause cracking.
Is the pain inside your breast? If it's in your milk ducts you need a specific dose of oral Fluconazole as the cream won't fix that. The over the counter tablet for vaginal thrush is not strong enough and then you need a lower dose for quite a while afterwards.
On an ongoing basis you will likely be fighting this, as you say, if she's on long term antibiotics. So firstly, clear this one up if you can by continuing to treat until a week or so after symptoms have stopped. Thereafter there are a number of things to do:
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Make sure that you keep everything absolutely sterilised (dummies, nipple shields, teethers etc). Change dummies several times a day.
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Iron the inside of your bra and wash after every use to keep on top of any spores.
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Boil wash towels after use (you can use a facecloth to dry your nipples to minimise washing volume).
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Splitting an acidophilus tablet, wetting your pinkie and dipping it in the powder, and letting your baby suck it off is an easy way to get some good probiotics into her. I would take the full dose of these yourself on an ongoing basis. When she's weaning you can mix the powder in with yoghurt, or any other puree type food.
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Grapefruit seed extract is really helpful (NOT grape seed oil). You can get it in tablets which you take every day and they help clear systemic thrush (good to take with the fluconazle if you have ductal thrush). You can also get a liquid version (you need the type with citricidal in it). This type is useful for loads of things. A couple of drops in the fabric softener drawer of your washing machine will keep on top of the spores for you. You can mix it with water and drink it (although it tastes horrible so I prefer the tablets) and you can mix it with water and put it onto your nips or wipe your baby's mouth with it (but it's drying and tastes bad so Daktarin may be preferable).
The leaflet you need, though, is this one:
www.breastfeedingnetwork.org.uk/pdfs/BfN_Thrush_leaflet_Feb_2009.pdf