Is it an old house? I think old houses can have a musty / dusty smell , despite being very clean. My old house can smell dusty, and I have pets so I’m really on top of any smells.
some things I think helps are -
daily airing , with windows regularly opened (as pp have said).
prices candles burned daily (they are odour eating candles, not very fragrant but banish any smells). I have the ‘pet’ one in living areas and ‘cooks candle’ in my kitchen.
keeping soft furnishings (curtains, sofa, throws, cushions etc) fresh with regular washing /airing/enzyme spray. Wash carpets at least once a year.
dehumidifier in any damp rooms / areas.
regular drain cleaning (old pipes can be smelly).
A good ‘deep clean’ where you really go at the areas that get missed in regular cleans. Dust the ceiling, move all the furniture and hoover / clean underneath, steam clean sofa/curtains etc.
im not saying your home isn’t clean… I just know that in my old house this helps keep it fresh…. and it’s very different from ‘new’ houses I’ve lived in, which seemed way less dusty and prone to smelling musty.