I started my PhD in 2003. The proposal for my application stated a fairly vague subject area, I had not a clue of research methods at the time, and I was probably admitted on the strength of my teaching experience (I was applying for the PhD as part of a teaching assistantship which funded me). I ended up finishing the PhD in 3 1/2 years, but spent the first half year or so reading up in the general subject area and essentially writing a viable proposal.
I am now PGR director at another university and am regularly reading and assessing PhD proposals. I am also managing applications coming in to the Doctoral Training Partnership we are part of. This made me realise that I would never ever be admitted to a PhD with the sort of proposal I submitted these days. The Doctoral Training Partnership in particular seems to require that students have already had all their research methods training before starting their PhD - in my case I picked these skills up during my PhD.
I've discussed this with a colleague recently and she agreed. Is your perception the same?