@blueshoes The energy of a storm travels far below the surface of the water (anyone who's ever tried snorkelling or diving along a rocky shoreline in wind driven waves can testify how dangerous that can be with the power of the waves!)
This boat had 2 propeller shafts from the main engines, the rudder & I think at least 10 water hose connections in the engine room (cooling intake & outflow for each main engine + 3 generators, plus probably assorted pumps & plumbing with through-hull fittings as well). If the anchor chain had caught on something as the boat initially span in the wind direction change, or a pipe shook loose, or the propellers hit something else adrift in the water, it could have resulted in a hole in the engine room hull with water coming in. (Potentially either aligned with a propeller shaft, or just a crack, so maybe not obvious to divers' initial checks?)
If the keel shook in the keelbox enough to crack a weld, that may have led to water entering forward of the engine room watertight bulkhead. Same problem if the mast movement caused a structural crack in the starboard shroud connection to the hull (which she's lying on, so not currently visible). But once any sloshing water & piled up furniture had shifted to the starboard side to add to the heeling moment of the down burst & any rain on the rig & deck (and giant foredeck veranda canvas, now loose?) - as soon as the heel angle reached 45• and vents were flooding too, it wouldn't take a great amount of time to sink enough that the main accommodation hatch at the centreline then had water pouring in too.
There wouldn't be enough buoyancy left in the forward crew area to keep the rest afloat, even if that was perfectly closed up & watertight.
There seems to be a (leaked) report that the engineer had left an engine room access open at some point - it's not clear if that was while they were trying to start engines, or once flooding had already been identified or what. I have to say I wouldn't be that keen to lock myself IN to a flooding compartment while trying to sort out any power systems! It takes next-level training to do that, even for our military... If he'd been called on deck without closing it back up, that will undoubtedly be identified as a contributing factor (as the watertight compartment aft of the engine room could also have flooded then) - but it's hard to know what may have contributed to that chain of events (if it happened) without being there at the time.
If an engine room hatch was left as he tried to exit the boat once the engine room was very flooded, in isolation, in the back of the boat with the most water in it, the prospect of trying to close a hatch that could knock you out or amputate an arm may have felt pretty futile & the natural decision may have been to try to get up to deck level while possible - with no knowledge that others still hadn't escaped from accommodation further forward?
One final potential cause I've seen discussed elsewhere is whether the impact of the downburst actually made the water less buoyant & that's why she sank so fast? It doesn't seem to make a lot of sense, but if the air was being pushed down from the atmosphere into the water so hard that it made it bubbly, there's less water for a boat to float in. This means any part of the boat touching a section of water this had happened to would instantly float lower. There's a short example of what happens to a floating object in aerated water here Swimming Object Sinks in Bubbly Water - YouTube
and a 3 minute summary of a scale test which was run to look at a 'Bermuda Triangle' hypothesis here Sinking a Ship with Bubbles | Bermuda Triangle | BBC Studios - YouTube If a downburst, low pressure area or waterspout had created this aerated effect near Bayesian & she partially 'fell' into less buoyant water & floated lower anyway, I think it's probably the most frightening prospect of all!
Now arguably the captain should still have been up earlier with the engines on to take the strain off the anchor chain like the Baden Powell (he may have actually done this, although I think the consensus based on the AIS ship's track seems to be that it's less likely).
But then, the skipper on the Baden Powell would not have been required to be 'on show' at 7/8am the next day, bright eyed & bushy tailed & ready to ferry the boss & his guests to lunch at a restaurant, or to sail to Sardina, or whatever was on the agenda in the absence of this tragedy. The other skipper would have had an easier time saying to his 1st mate 'you've got the watch, I'm going below for 4 hours to sleep'. The pressures are a bit different on superyacht captains - particularly when it's the boss & his closest guests on board. No human can be 24 hour alert. The rights and wrongs of that in this industry will hopefully be reassessed a bit harder in light of this incident!