Yes you're right that the guidance has changed to be avoid PCR and LFD for 90 days after confirmed Covid, but if you read in the DHSC policy update on this, they explained the reasoning for that change, and it wouldn't apply in this situ of being at the tail end of a confirmed infection:
"Testing within 90 days of a positive PCR test
Following a substantial clinical review of the latest evidence and testing data, we are now changing the advice for retesting within 90 days of a positive. From now on, if someone tests positive with a PCR test, they should not be tested using PCR or LFD for 90 days, unless they develop new symptoms during this time, in which case they should be retested immediately using PCR. This 90 day period is from the initial onset of symptoms or, if asymptomatic when tested, their positive test result.
The previous policy to continue LFD testing following a positive PCR result was because although very unlikely, it is possible to be re- infected within 90 days. However based on the latest testing data and clinical advice, the policy has now changed.
The clinical view is that during this 90 day window from a positive test, given the low rate of reinfection during this window, it is significantly more likely that a positive LFD test would be a false result, rather than someone being re-infected, causing people to isolate unnecessarily. Therefore we are now stopping the regular testing using LFD during this 90 day period. The individual should return to the regular LFD and PCR regime once 90 days has passed."
We're not talking about a reinfection here, or a random LFT positive which is more likely to be a false positive due to the fact the person still has decent immunity and is unlikely to have caught it again within 90 days. We're talking about the tail end (only 10 days in) of a confirmed infection.