[quote BadPoet]Much as I am enjoying people coming up with 'theories' about the dark red 'cold north' and our working, mask-wearing and socialising habits, again - the map is wrong. Here's a better one www.theguardian.com/world/2020/sep/16/coronavirus-uk-map-confirmed-covid-cases-and-deaths-today[/quote]
Is it better though or simply a different method of collecting the data. The map I linked to is from The COVID Symptom Study which is the second method discussed below.
Here is an overview of the differences.
- The number of lab confirmed cases
This is the rawest form of data that includes records of all the swab positive tests on any given day in the UK, including hospital cases.
Things to consider
Many cases of COVID are not recorded. So lab confirmed cases are just a fraction of the total story.This data is the most immediate and only includes a small lag, which makes it suitable for spotting outbreaks, especially in hospitals.The recorded cases come from a variety of sources, predominantly constitute tests from hospitals, care homes, care workers, healthcare professionals and other communities at high risk of infection. The reported numbers can offer crude estimates but are sensitive to testing patterns, test availability and other changes in government policies.
The COVID Symptom Study figures
How do we calculate incidence rates?
We have a two step process. First we identify app users who log new symptoms after being healthy for at least 9 days, and estimate the proportion of newly sick app users. These individual users are then invited to have a COVID swab test provided by the Department of Health taken within 24 hours and are asked to continue logging their symptoms in the app.
The results of these tests allow us to identify the proportion of newly sick individuals who test positive for COVID-19. This two step process enables us to do more targeted swab tests focussed on sick users, who are more likely to be positive. We scale the proportion of sick users with the proportion of those testing positive to get the incidence rate and then generalize it to the wider population to give the estimated number of daily new cases across the UK.
How do we calculate prevalence rates?
We now have a better picture of how long it takes to recover from COVIDand as a result we have built a recovery model that tells us how many people recover within a specific number of days from symptom onset. For example, we observe that only 52.2% of people recover within 13 days. We have combined this recovery model with our daily new cases model to produce our prediction of the number of daily active cases.
In a nutshell, our prevalence is:
Yesterday’s active cases + today’s new cases - today’s recoveries = Number of active / symptomatic cases.
Things to consider:Our targeted testing strategy enables us to record more positive tests. For example, last week ONS published estimates based on 10 positive tests, whereas we published estimates using 56 positive tests. The higher number of positive tests makes it possible to estimate incidences at a regional level, which permits us to reliably compare and comment about the different regions in the UK.The app uses all the test results that we receive and estimates incidence for the entire UK. ONS surveys are for England only at present.We are only able to invite those who are using the app for COVID testing, and our user base is not fully representative of the entire country. So, our estimates are slightly biased towards the demographic and behavioural characteristics of our app users, although we adjust for age and deprivation when extrapolation to UK population This means that although users can log for relatives, our estimates don't include many cases in hospitals, care homes and other communities where the app usage is subpar or non-existent.The app is not able to monitor asymptomatic users (i.e. those without any symptoms) and thus our estimates don’t account for them. So, our estimates will be lower than ONS estimates, which include asymptomatic cases, although they don't screen for the same number of symptoms as we do.The incidence estimates are updated everyday, but we have a four day lag to provide ample time for our users to get tested and log their test results. The prevalence estimates also use the symptoms logged by 3 million users in the UK to predict how likely someone is to test positive on each day.
- The ONS figures
The ONS randomly invites around 8,000-9,000 households in England to participate in its testing program and uses these test results to estimate incidence and prevalence. The ONS publishes an estimated prevalence and incidence every two weeks based on their infection survey test results.
Things to consider:As it is a random invitation survey, ONS can test people across all ages with enough representation from various regions and communities in England. So, its estimates are more representative of the population, although will still have some biases. For example, it will only measure people who are willing to engage in a repeated survey for the government.The randomness of inviting people ensures that both symptomatic users and asymptomatic users are tested, unlike our app.It is a small sample - only 8-9,000 households vs the millions in the UK. It cannot see hotspots in particular areas therefore.The estimates are not updated daily. It is once a week with an extra four day lag. This means that the figures are not as sensitive to sudden changes/outbreaksThe ONS publishes numbers only for the whole of England (and not for regions) because of small numbers, though numbers may increase.It only accounts for private households, it can not account for the number of cases in hospitals and other care situations.
The lab confirmed cases is a standalone figure, which is not comparable to the prevalence and incidence rates from the other two survey sources. The ONS and COVIDSymptom Study app provide roughly the same estimates over the last month which is reassuring.
The results over the past few weeks of surveys have suggested that the rates have been falling over time, though our app has shown regional differences.
We will be continuing to release weekly updates on the data on Thursday each week and we hope that this blog has helped outline the differences between the data and what each figure is telling us about the current COVID situation in the UK.
covid.joinzoe.com/post/ons-covid-comparison